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- [options]
- # Possible values for validate:
- # - all: perform full validation
- # - none: don't perform any validation
- Validation validate:all
- # Possible values for tokenizer
- # - ptblike: emulate Penn Treebank tokenization
- # - mecab: perform Japanese tokenization using MeCab
- # - whitespace: split by whitespace characters in source text (only)
- Tokens tokenizer:whitespace
- # Possible values for splitter:
- # - regex : regular expression-based sentence splitting
- # - newline: split by newline characters in source text (only)
- Sentences splitter:regex
- # Possible values for logfile:
- # - <NONE> : no annotation logging
- # - NAME : log into file NAME (e.g. "/home/brat/annotation.log")
- Annotation-log logfile:<NONE>
- [search]
- # Search option configuration. Configured queries will be available in
- # text span annotation dialogs. When selected on the UI, these open
- # the given URL ("<URL>") with the string "%s" replaced with the
- # selected text span.
- Google <URL>:http://www.google.com/search?q=%s
- Wikipedia <URL>:http://en.wikipedia.org/wiki/Special:Search?search=%s
- [annotators]
- # Automatic annotation service configuration. The values of "tool" and
- # "model" are required for the UI, and "<URL>" should be filled with
- # the URL of the web service. See the brat documentation for more
- # information.
- # Examples:
- # Random tool:Random, model:Random, <URL>:http://localhost:47111/
- # Stanford-CoNLL-MUC tool:Stanford_NER, model:CoNLL+MUC, <URL>:http://127.0.0.1:47111/
- # NERtagger-GENIA tool:NERtagger, model:GENIA, <URL>:http://example.com:8080/tagger/
- [disambiguators]
- # Automatic semantic disambiguation service configuration. The values
- # of "tool" and "model" are required for the UI, and "<URL>" should be
- # filled with the URL of the web service. See the brat documentation
- # for more information.
- # Example:
- # simsem-GENIA tool:simsem, model:GENIA, <URL>:http://example.com:8080/tagger/%s
- [normalization]
- # Configuration for normalization against external resources. The
- # resource name (first field of each line) should match that of a
- # normalization DB on the brat server (see tools/norm_db_init.py),
- # "<URL>" should be filled with the URL of the resource (preferably
- # one providing a serach interface), and "<URLBASE>" should be a
- # string containing "%s" that, when replacing "%s" with an ID in
- # the external resource, becomes a link to a page representing
- # the entry corresponding to the ID in that resource.
- # Example
- #UniProt <URL>:http://www.uniprot.org/, <URLBASE>:http://www.uniprot.org/uniprot/%s
- #GO <URL>:http://www.geneontology.org/, <URLBASE>:http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:%s
- #FMA <URL>:http://fme.biostr.washington.edu/FME/index.html, <URLBASE>:http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=FMA&termId=FMA:%s
- #Wikipedia <URL>:http://en.wikipedia.org, <URLBASE>:http://en.wikipedia.org/?curid=%s
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