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- # -*- Mode: Text; tab-width: 8; indent-tabs-mode: nil; coding: utf-8; -*-
- # vim:set ft=conf ts=2 sw=2 sts=2 autoindent:
- # Simple text-based definitions of entity, relation and event types
- # and event attributes for a subset of the Nactem metaknowledge
- # annotation. Note that to support the full corpus annotation, the
- # entity and event types should be extended substantially.
- [entities]
- # physical entities
- Amino_acid_monomer
- Body_region
- Carbohydrate
- Cell_component
- Cell_cultured
- Cell_natural
- DNA_domain_or_region
- DNA_family_or_group
- DNA_molecule
- DNA_substructure
- Element
- Inorganic_compound
- Lipid
- Multicellular_organism_genetically_modified
- Multicellular_organism_natural
- Nucleotide
- Organic_compound_other
- Peptide
- Polynucleotide
- Protein_complex
- Protein_domain_or_region
- Protein_family_or_group
- Protein_molecule
- Protein_substructure
- RNA_domain_or_region
- RNA_family_or_group
- RNA_molecule
- RNA_substructure
- Tissue_cultured
- Tissue_natural
- Unicellular_organism
- Virus
- Other
- # metaknowledge annotation cues
- Polarity-Cue
- KT-Cue
- CL-Cue
- Manner-Cue
- Source-Cue
- [relations]
- # allow any nesting
- ENTITY-NESTING Arg1:<ANY>, Arg2:<ANY>
- [events]
- <GGP-PFG>=Gene_or_gene_product|Protein_family_or_group
- <PROTEIN-PART>=Protein_domain_or_region|Amino_acid_monomer
- <MK-ARGS>=Cue*:Polarity-Cue|KT-Cue|CL-Cue|Manner-Cue|Source-Cue
- Artificial_process Theme*:<ANY>, <MK-ARGS>
- Binding Theme+:<ANY>, <MK-ARGS>
- Biological_process Theme*:<ANY>, <MK-ARGS>
- Cell_adhesion Theme+:<ANY>, <MK-ARGS>
- Cell_communication Theme*:<ANY>, <MK-ARGS>
- Cell_differentiation Theme*:<ANY>, <MK-ARGS>
- Cell_recognition Theme*:<ANY>, <MK-ARGS>
- Cellular_physiological_process Theme*:<ANY>, <MK-ARGS>
- Cellular_process Theme*:<ANY>, <MK-ARGS>
- Correlation Theme*:<ANY>, <MK-ARGS>
- DNA_metabolism Theme*:<ANY>, <MK-ARGS>
- DNA_modification Theme*:<ANY>, <MK-ARGS>
- DNA_recombination Theme*:<ANY>, <MK-ARGS>
- Gene_expression Theme*:<ANY>, <MK-ARGS>
- Initiation_of_viral_infection Theme*:<ANY>, <MK-ARGS>
- Localization Theme*:<ANY>, <MK-ARGS>
- Metabolism Theme*:<ANY>, <MK-ARGS>
- Molecular_Function Theme*:<ANY>, <MK-ARGS>
- Mutagenesis Theme*:<ANY>, <MK-ARGS>
- Physiological_process Theme*:<ANY>, <MK-ARGS>
- Protein_amino_acid_acetylation Theme*:<ANY>, <MK-ARGS>
- Protein_amino_acid_deacetylation Theme*:<ANY>, <MK-ARGS>
- Protein_amino_acid_dephosphorylation Theme*:<ANY>, <MK-ARGS>
- Protein_amino_acid_phosphorylation Theme*:<ANY>, <MK-ARGS>
- Protein_catabolism Theme*:<ANY>, <MK-ARGS>
- Protein_metabolism Theme*:<ANY>, <MK-ARGS>
- Protein_modification Theme*:<ANY>, <MK-ARGS>
- Protein_processing Theme*:<ANY>, <MK-ARGS>
- Protein_ubiquitination Theme*:<ANY>, <MK-ARGS>
- RNA_metabolism Theme*:<ANY>, <MK-ARGS>
- Transcription Theme*:<ANY>, <MK-ARGS>
- Translation Theme*:<ANY>, <MK-ARGS>
- Viral_life_cycle Theme*:<ANY>, <MK-ARGS>
- Regulation Theme*:<ANY>, Cause*:<ANY>, <MK-ARGS>
- Negative_regulation Theme*:<ANY>, Cause*:<ANY>, <MK-ARGS>
- Positive_regulation Theme*:<ANY>, Cause*:<ANY>, <MK-ARGS>
- [attributes]
- Polarity Arg:<EVENT>, Value:Negative|Positive, <DEFAULT>:Positive
- CL Arg:<EVENT>, Value:L1|L2|L3
- Manner Arg:<EVENT>, Value:High|Low|Neutral, <DEFAULT>:Neutral
- Source Arg:<EVENT>, Value:Other|Current, <DEFAULT>:Current
- KT Arg:<EVENT>, Value:Investigation|Analysis|Observation|Gen-Fact|Gen-Method|Gen-Other
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