visual.conf 1.7 KB

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  1. # -*- Mode: Text; tab-width: 8; indent-tabs-mode: nil; coding: utf-8; -*-
  2. # vim:set ft=conf ts=2 sw=2 sts=2 autoindent:
  3. [labels]
  4. ### Entity labels
  5. Protein | Protein | Pro | Pr | P
  6. Entity | Entity | Ent | En | E
  7. Chemical | Chemical | Chem
  8. Organism | Organism | Org
  9. Two-component-system | Two-component-system | 2-comp-sys | 2CS
  10. Regulon-operon | Regulon-operon | Reg/op
  11. ### Relation labels
  12. Equiv | Equiv | Eq
  13. ### Event labels
  14. Gene_expression | Gene expression | Expression | Expr
  15. Transcription | Transcription | Trns
  16. Protein_catabolism | Protein catabolism | Catabolism | Catab
  17. Localization | Localization | Locl
  18. Binding | Binding | Bind
  19. Phosphorylation | Phosphorylation | Phos
  20. Regulation | Regulation | Reg
  21. Positive_regulation | Positive regulation | +Regulation | +Reg
  22. Negative_regulation | Negative regulation | -Regulation | -Reg
  23. Process | Process | Proc
  24. ### Role labels
  25. Theme | Theme | Th
  26. Cause | Cause | Ca
  27. Site | Site | Si
  28. CSite | CSite | CSi
  29. Participant | Participant | Pa
  30. [drawing]
  31. ### Defaults
  32. SPAN_DEFAULT fgColor:black, bgColor:lightgreen, borderColor:darken
  33. ARC_DEFAULT color:black, dashArray:-, arrowHead:triangle-5
  34. ATTRIBUTE_DEFAULT glyph:*
  35. ### Entity drawing
  36. Protein bgColor:#7fa2ff
  37. Entity bgColor:#b4c8ff
  38. Chemical bgColor:#8fcfff
  39. Organism bgColor:#ffccaa
  40. Two-component-system bgColor:#9999ff
  41. Regulon-operon bgColor:#9999ff
  42. ### Event drawing
  43. Regulation bgColor:#ffff00
  44. Positive_regulation bgColor:#e0ff00
  45. Negative_regulation bgColor:#ffe000
  46. Process bgColor:#9fe67f
  47. ### Arc drawing
  48. Equiv dashArray:3-3, arrowHead:none
  49. Cause color:#007700
  50. Site color:#0000aa
  51. CSite color:#0000aa
  52. ToLoc color:#0000cc
  53. AtLoc color:#0000cc
  54. # Attributes
  55. Negation box:crossed, glyph:<NONE>, dashArray:<NONE>
  56. Speculation dashArray:3-3, glyph:<NONE>