visual.conf 1.4 KB

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  1. # -*- Mode: Text; tab-width: 8; indent-tabs-mode: nil; coding: utf-8; -*-
  2. # vim:set ft=conf ts=2 sw=2 sts=2 autoindent:
  3. [labels]
  4. ### Entity labels
  5. Protein | Protein | Pro | Pr | P
  6. Entity | Entity | Ent | En | E
  7. ### Relation labels
  8. Equiv | Equiv | Eq
  9. ### Event labels
  10. Gene_expression | Gene expression | Expression | Expr
  11. Transcription | Transcription | Trns
  12. Protein_catabolism | Protein catabolism | Catabolism | Catab
  13. Localization | Localization | Locl
  14. Binding | Binding | Bind
  15. Phosphorylation | Phosphorylation | Phos
  16. Regulation | Regulation | Reg
  17. Positive_regulation | Positive regulation | +Regulation | +Reg
  18. Negative_regulation | Negative regulation | -Regulation | -Reg
  19. ### Role labels
  20. Theme | Theme | Th
  21. Cause | Cause | Ca
  22. Site | Site | Si
  23. CSite | CSite | CSi
  24. [drawing]
  25. ### Defaults
  26. SPAN_DEFAULT fgColor:black, bgColor:lightgreen, borderColor:darken
  27. ARC_DEFAULT color:black, dashArray:-, arrowHead:triangle-5
  28. ATTRIBUTE_DEFAULT glyph:*
  29. ### Entity drawing
  30. Protein bgColor:#7fa2ff
  31. Entity bgColor:#b4c8ff
  32. ### Event drawing
  33. Regulation bgColor:#ffff00
  34. Positive_regulation bgColor:#e0ff00
  35. Negative_regulation bgColor:#ffe000
  36. ### Arc drawing
  37. Equiv dashArray:3-3, arrowHead:none
  38. Cause color:#007700
  39. Site color:#0000aa
  40. CSite color:#0000aa
  41. ToLoc color:#0000cc
  42. AtLoc color:#0000cc
  43. # Attributes
  44. Negation box:crossed, glyph:<NONE>, dashArray:<NONE>
  45. Speculation dashArray:3-3, glyph:<NONE>