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- # -*- Mode: Text; tab-width: 8; indent-tabs-mode: nil; coding: utf-8; -*-
- # vim:set ft=conf ts=2 sw=2 sts=2 autoindent:
- # Simple text-based definitions of entity, relation and event types
- # and event attributes for the BioNLP Shared Task 2011 GE task.
- [entities]
- Protein
- Entity
- [relations]
- Equiv Arg1:Protein, Arg2:Protein, <REL-TYPE>:symmetric-transitive
- # (No entity nestings permitted for GE. Could be defined using special
- # relation type ENTITY-NESTING if necessary.)
- [events]
- Gene_expression Theme:Protein
- Transcription Theme:Protein
- Protein_catabolism Theme:Protein
- Localization Theme:Protein, ToLoc?:Entity, AtLoc?:Entity
- Binding Theme+:Protein, Site*:Entity
- ----------------------------------------
- Phosphorylation Theme:Protein, Site?:Entity
- ----------------------------------------
- Regulation Theme:<EVENT>|Protein, Cause?:<EVENT>|Protein, Site?:Entity, CSite?:Entity
- Positive_regulation Theme:<EVENT>|Protein, Cause?:<EVENT>|Protein, Site?:Entity, CSite?:Entity
- Negative_regulation Theme:<EVENT>|Protein, Cause?:<EVENT>|Protein, Site?:Entity, CSite?:Entity
- [attributes]
- Negation Arg:<EVENT>
- Speculation Arg:<EVENT>
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