visual.conf 1.7 KB

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  1. # -*- Mode: Text; tab-width: 8; indent-tabs-mode: nil; coding: utf-8; -*-
  2. # vim:set ft=conf ts=2 sw=2 sts=2 autoindent:
  3. [labels]
  4. ### Entity labels
  5. Protein | Protein | Pro | Pr | P
  6. Entity | Entity | Ent | En | E
  7. ### Relation labels
  8. Equiv | Equiv | Eq
  9. ### Event labels
  10. Acetylation | Acetylation | Acet
  11. Glycosylation | Glycosylation | Glyc
  12. Hydroxylation | Hydroxylation | Hydr
  13. Methylation | Methylation | Meth
  14. Phosphorylation | Phosphorylation | Phos
  15. Ubiquitination | Ubiquitination | Ubiq
  16. Deacetylation | Deacetylation | -Acet
  17. Deglycosylation | Deglycosylation | -Glyc
  18. Dehydroxylation | Dehydroxylation | -Hydr
  19. Demethylation | Demethylation | -Meth
  20. Dephosphorylation | Dephosphorylation | -Phos
  21. Deubiquitination | Deubiquitination | -Ubiq
  22. DNA_methylation | DNA methylation | DNA meth
  23. DNA_demethylation | DNA demethylation | DNA -meth
  24. Catalysis | Catalysis | Catal
  25. ### Role labels
  26. Theme | Theme | Th
  27. Cause | Cause | Ca
  28. Site | Site | Si
  29. Sidechain | Sidechain | SCh
  30. Contextgene | Contextgene | CGn
  31. [drawing]
  32. ### Defaults
  33. SPAN_DEFAULT fgColor:black, bgColor:lightgreen, borderColor:darken
  34. ARC_DEFAULT color:black, dashArray:-, arrowHead:triangle-5
  35. ATTRIBUTE_DEFAULT glyph:*
  36. ### Entity drawing
  37. Protein bgColor:#7fa2ff
  38. Entity bgColor:#b4c8ff
  39. ### Event drawing
  40. Deacetylation bgColor:#18c59a
  41. Deglycosylation bgColor:#18c59a
  42. Dehydroxylation bgColor:#18c59a
  43. Demethylation bgColor:#18c59a
  44. Dephosphorylation bgColor:#18c59a
  45. Deubiquitination bgColor:#18c59a
  46. DNA_demethylation bgColor:#18c59a
  47. Catalysis bgColor:#e0ff00
  48. ### Arc drawing
  49. Equiv dashArray:3-3, arrowHead:none
  50. Cause color:#007700
  51. Site color:#0000aa
  52. Sidechain color:#303030
  53. Contextgene color:#303030
  54. # Attributes
  55. Negation box:crossed, glyph:<NONE>, dashArray:<NONE>
  56. Speculation dashArray:3-3, glyph:<NONE>