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- # -*- Mode: Text; tab-width: 8; indent-tabs-mode: nil; coding: utf-8; -*-
- # vim:set ft=conf ts=2 sw=2 sts=2 autoindent:
- # Simple text-based definitions of entity, relation and event types
- # and event attributes for the BioNLP Shared Task 2011 EPI task.
- [entities]
- Protein
- Entity
- [relations]
- Equiv Arg1:Protein, Arg2:Protein, <REL-TYPE>:symmetric-transitive
- Equiv Arg1:Entity, Arg2:Entity, <REL-TYPE>:symmetric-transitive
- # (No entity nestings permitted in EPI. Could be defined using special
- # relation type ENTITY-NESTING if necessary.)
- [events]
- Catalysis Theme:<EVENT>, Cause:Protein
- ----------------------------------------
- DNA_methylation|GO:0006306 Theme:Protein, Site?:Entity
- DNA_demethylation|GO:0080111 Theme:Protein, Site?:Entity
- ----------------------------------------
- Acetylation|GO:0006473 Theme:Protein, Site?:Entity, Contextgene?:Protein
- Methylation|GO:0006479 Theme:Protein, Site?:Entity, Contextgene?:Protein
- Glycosylation|GO:0006486 Theme:Protein, Site?:Entity, Sidechain?:Entity
- Hydroxylation|GO:0018126 Theme:Protein, Site?:Entity
- Phosphorylation|GO:0006468 Theme:Protein, Site?:Entity
- Ubiquitination|GO:0016567 Theme:Protein, Site?:Entity
- ----------------------------------------
- Deacetylation|GO:0006476 Theme:Protein, Site?:Entity, Contextgene?:Protein
- Demethylation|GO:0006482 Theme:Protein, Site?:Entity, Contextgene?:Protein
- Deglycosylation|GO:0006517 Theme:Protein, Site?:Entity, Sidechain?:Entity
- Dehydroxylation|GO:------- Theme:Protein, Site?:Entity
- Dephosphorylation|GO:0006470 Theme:Protein, Site?:Entity
- Deubiquitination|GO:0016579 Theme:Protein, Site?:Entity
- [attributes]
- Negation Arg:<EVENT>
- Speculation Arg:<EVENT>
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