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- # Visual configuration for BioNLP Shared Task 2013
- # Pathway Curation (PC) task
- [labels]
- Gene_or_gene_product | Gene or gene product | GGP
- Simple_chemical | Simple chemical | Chemical | Chem
- Cellular_component | Cellular component | Cell comp
- Gene_expression | Gene expression | Expression | Expr
- Transcription | Transcription
- Translation | Translation
- Binding | Binding | Bind
- Regulation | Regulation | Reg
- Positive_regulation | Positive regulation | +Regulation | +Reg
- Negative_regulation | Negative regulation | -Regulation | -Reg
- Phosphorylation | Phosphorylation | Phos
- Dephosphorylation | Dephosphorylation | -Phos
- Acetylation | Acetylation | Acet
- Deacetylation | Deacetylation | -Acet
- Hydroxylation | Hydroxylation | Hydr
- Dehydroxylation | Dehydroxylation | -Hydr
- Glycosylation | Glycosylation | Glyc
- Deglycosylation | Deglycosylation | -Glyc
- Methylation | Methylation | Meth
- Demethylation | Demethylation | -Meth
- Ubiquitination | Ubiquitination | Ubiq
- Deubiquitination | Deubiquitination | -Ubiq
- DNA_methylation | DNA methylation | DNA meth
- DNA_demethylation | DNA demethylation | DNA -meth
- ### Relation types
- Equiv | Equiv | Eq
- ### Role types
- Theme | Theme | Th
- Cause | Cause | Ca
- Site | Site | Si
- Product | Product | Pr
- Participant | Participant | Pa
- [drawing]
- SPAN_DEFAULT fgColor:black, bgColor:lightgreen, borderColor:darken
- ARC_DEFAULT color:black, arrowHead:triangle-5
- ATTRIBUTE_DEFAULT glyph:*
- Regulation bgColor:#ffff00
- Positive_regulation bgColor:#e0ff00
- Activation bgColor:#e0ff00
- Negative_regulation bgColor:#ffe000
- Inactivation bgColor:#ffe000
- Simple_chemical bgColor:#9fdfff
- Gene_or_gene_product bgColor:#8fb2ff
- Complex bgColor:#8f97ff
- Cellular_component bgColor:#bf82ff
- Cause color:#007700, arrowHead:triangle-5
- Site color:#0000aa, arrowHead:triangle-5
- Negation box:crossed, glyph:<NONE>, dashArray:<NONE>
- Speculation dashArray:3-3, glyph:<NONE>
- Equiv dashArray:3-3, arrowHead:none
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