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- # -*- Mode: Text; tab-width: 8; indent-tabs-mode: nil; coding: utf-8; -*-
- # vim:set ft=conf ts=2 sw=2 sts=2 autoindent:
- # Note: this visual.conf is a combination of visual configurations for
- # a number of tasks that brat has been applied to. These settings are
- # here to provide defaults for new installations, and are not intended
- # to be used for reference or a starting point for creating new
- # visual.conf files. For simple, clean examples, see the visual.conf
- # files in subdirectories of configurations/.
- [labels]
- # Label definitions for display. The labels are separated by pipe
- # characters "|".
- # The first label must correspond to the form found first in other
- # configuration files. As this form must be valid for use in e.g. the
- # BioNLP ST standoff format, it must have only ASCII alphanumerics,
- # "_" or "-" (i.e. match '^[a-zA-Z0-9_-]$').
- # Labels other than the first define forms that are presented to the
- # user in the annotation interface, with the first form being the
- # preferred full form and the others abbreviations that will be used
- # if fuller forms do not fit in the given space. These have no format
- # restrictions and can contain e.g. space (this tends to make the
- # first and second columns identical for most terms, which do not
- # contain space). Surrounding space is ignored.
- ### Entity types
- Anatomical_entity | Anatomical entity
- Anatomical_structure | Anatomical structure
- Organism_subdivision | Organism subdivision | Org subdiv
- Anatomical_system | Anatomical system | Anat syst
- Organ | Organ
- Multi-tissue_structure | Multi-tissue structure | Mtissue struct | Mtissue
- Tissue | Tissue
- Cell | Cell
- Developing_anatomical_structure | Developing anatomical structure | Developing structure | Developing
- Cellular_component | Cellular component | Cell comp
- Organism_substance | Organism substance | Org subst
- Immaterial_anatomical_entity | Immaterial anatomical entity | Immaterial entity | Immaterial
- Pathological_formation | Pathological formation | Pathological
- OUT-OF-SCOPE | OUT-OF-SCOPE
- ### Relation types
- Equiv | Equiv | Eq
- frag | frag
- Part-of | Part-of
- [drawing]
- # Other aspects of visual presentation. The format is label (form used
- # in other configurations, first of the labels) of the annotation
- # separated by tab from comma-separated key:value pairs. The recognized
- # keys, their values and purpose are:
- # - fgColor : any HTML color specification (e.g. "black"), sets
- # the color of a span text in the visualization.
- # - bgColor : any HTML color specification (e.g. "white"), sets
- # the color of a span "box" background in the visualization.
- # - borderColor : any HTML color specification (e.g. "black"), sets
- # the color of a span "box" border in the visualization.
- # Also supports special value "darken", which specifies to
- # use a darker shade of bgColor for the border.
- # - color : any HTML color specification (e.g. "black"), sets
- # the color of an arc in the visualization.
- # - dashArray : any valid SVG stroke-dasharray specification using
- # dashes (instead of commas or space) as separators
- # (e.g. "3-3"), sets the dash/dot pattern for lines
- # in the span/arc visualization ("-" works for solid
- # line)
- # The special labels "SPAN_DEFAULT" and "ARC_DEFAULT" are recognized
- # as setting defaults that will be used for types without specific
- # settings. It is not necessary to define all aspects of the
- # visualization (e.g. just Color can be given): defaults will be
- # used for unspecified cases.
- SPAN_DEFAULT fgColor:black, bgColor:lightgreen, borderColor:darken
- ARC_DEFAULT color:black, arrowHead:triangle-5
- Equiv dashArray:3-3, arrowHead:none
- Part-of color:blue
- # entity span colors
- Organism_subdivision bgColor:#ddaaaa
- Anatomical_system bgColor:#ee99cc
- Organ bgColor:#ff95ee
- Multi-tissue_structure bgColor:#e999ff
- Tissue bgColor:#cf9fff
- Developing_anatomical_structure bgColor:#ff9fff
- Cell bgColor:#cf9fff
- Cellular_component bgColor:#bbc3ff
- Organism_substance bgColor:#ffeee0
- Immaterial_anatomical_entity bgColor:#fff9f9
- Pathological_formation bgColor:#aaaaaa
- OUT-OF-SCOPE bgColor:#ff0000
- ATTRIBUTE_DEFAULT glyph:*
- # TODO: attribute visualization config
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