visual.conf 1.8 KB

123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081
  1. # -*- Mode: Text; tab-width: 8; indent-tabs-mode: nil; coding: utf-8; -*-
  2. # vim:set ft=conf ts=2 sw=2 sts=2 autoindent:
  3. [labels]
  4. ### Entity labels
  5. Protein | Protein | Pro | Pr | P
  6. Entity | Entity | Ent | En | E
  7. Complex
  8. Drug
  9. Simple_molecule | Simple molecule | Smpl mol
  10. ### Relation labels
  11. Equiv | Equiv | Eq
  12. ### Event labels
  13. Gene_expression | Gene expression | Expression | Expr
  14. Transcription | Transcription | Trns
  15. Protein_catabolism | Protein catabolism | Catabolism | Catab
  16. Localization | Localization | Locl
  17. Binding | Binding | Bind
  18. Phosphorylation | Phosphorylation | Phos
  19. Dephosphorylation | Dephosphorylation | -Phos
  20. Ubiquitination | Ubiquitination | Ubiq
  21. Deubiquitination | Deubiquitination | -Ubiq
  22. Regulation | Regulation | Reg
  23. Positive_regulation | Positive regulation | +Regulation | +Reg
  24. Negative_regulation | Negative regulation | -Regulation | -Reg
  25. ### Role labels
  26. Theme | Theme | Th
  27. Cause | Cause | Ca
  28. Site | Site | Si
  29. CSite | CSite | CSi
  30. Product | Prod
  31. [drawing]
  32. ### Defaults
  33. SPAN_DEFAULT fgColor:black, bgColor:lightgreen, borderColor:darken
  34. ARC_DEFAULT color:black, dashArray:-, arrowHead:triangle-5
  35. ATTRIBUTE_DEFAULT glyph:*
  36. ### Entity drawing
  37. Protein bgColor:#7fa2ff
  38. Entity bgColor:#b4c8ff
  39. Simple_molecule bgColor:#8fcfff
  40. ### Event drawing
  41. Regulation bgColor:#ffff00
  42. Positive_regulation bgColor:#e0ff00
  43. Catalysis bgColor:#e0ff00
  44. Negative_regulation bgColor:#ffe000
  45. Dephosphorylation bgColor:#18c59a
  46. Deubiquitination bgColor:#18c59a
  47. Dissociation bgColor:#18c59a
  48. ### Arc drawing
  49. Equiv dashArray:3-3, arrowHead:none
  50. Cause color:#007700
  51. Site color:#0000aa
  52. CSite color:#0000aa
  53. ToLoc color:#0000cc
  54. AtLoc color:#0000cc
  55. Product color:#000077
  56. # Attributes
  57. Negation box:crossed, glyph:<NONE>, dashArray:<NONE>
  58. Speculation dashArray:3-3, glyph:<NONE>