BIDI_ML_INFO_EXTRACTION/BiddingKG/dl/projectCode/ProjectCodeNameRecognition.py

import sys
import os

sys.path.append(os.path.abspath("../../.."))
import gensim
import numpy as np
from keras import models
from keras import layers
from keras.callbacks import ModelCheckpoint

import pickle
from projectLabel import *
import re
from BiddingKG.dl.common.Connection import getConnection
from models import *
import tensorflow as tf
#不使用gpu加速
os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID"
os.environ["CUDA_VISIBLE_DEVICES"] = ""

def save(object_to_save, path):
    '''
    保存对象
    @Arugs:
        object_to_save: 需要保存的对象

    @Return:
        保存的路径
    '''
    with open(path, 'wb') as f:
        pickle.dump(object_to_save, f)


def load(path):
    '''
    读取对象
    @Arugs:
        path: 读取的路径

    @Return:
        读取的对象
    '''
    with open(path, 'rb') as f:
        object = pickle.load(f)
        return object


def EmbeddingVocabAndMatrix(Embedding_size=60):
    '''
    @summary:获取子向量的词典和子向量矩阵
    '''
    singlew2v_file = "../singlew2v_model.vector"
    singlew2v_model = gensim.models.KeyedVectors.load_word2vec_format(singlew2v_file, binary=True)

    vocab = ['<pad>', '<unk>'] + singlew2v_model.index2word

    embedding_matrix = np.zeros((len(vocab), Embedding_size))
    for i in range(2, len(vocab)):
        embedding_matrix[i] = singlew2v_model[vocab[i]]

    return vocab, embedding_matrix

from sklearn.metrics import accuracy_score
def getAcc(y_batch,logits,trans,lengths):
    index = 0
    small = -1000.0
    start = np.asarray([[small] * 7 + [0]])

    preds = []
    true_tags = []
    for score, length in zip(logits, lengths):
        score = score[:length]
        # pad = small * np.ones([length, 1])
        # logit = np.concatenate([score, pad], axis=1)
        # logit = np.concatenate([start, logit], axis=0)
        # path, _ = tf.contrib.crf.viterbi_decode(logit, trans)
        path, _ = viterbi_decode(score, trans)
        preds += path[0:]
        # preds += path[1:]
        index += 1

    for y, length in zip(y_batch, lengths):
        y = y.tolist()
        true_tags += y[: length]
    acc = accuracy_score(np.reshape(true_tags,(-1)), np.reshape(preds,(-1)))
    return acc
from BiddingKG.dl.common.Utils import viterbi_decode
def decode(logits, trans, sequence_lengths, tag_num):
    viterbi_sequences = []
    small = -1000.0
    start = np.asarray([[small] * tag_num + [0]])
    for logit, length in zip(logits, sequence_lengths):
        score = logit[:length]
        # pad = small * np.ones([length, 1])
        # score = np.concatenate([score, pad], axis=1)
        # score = np.concatenate([start, score], axis=0)
        viterbi_seq, viterbi_score = viterbi_decode(score, trans)
        viterbi_sequences.append(viterbi_seq[1:])
    return viterbi_sequences
def training():
    MAX_LEN = 300
    train = True
    EMBED_DIM = 60
    BiRNN_UNITS = 128
    filepath = "model_project_" + str(EMBED_DIM) + "_" + str(BiRNN_UNITS) + ".hdf5"
    vocabpath = "vocab.pk"
    classlabelspath = "classlabels.pk"
    usersinglew2v = True

    if usersinglew2v:
        singlew2v_vocab, singlew2v_matrix = EmbeddingVocabAndMatrix()
    else:
        singlew2v_vocab, singlew2v_matrix = None, None
    if train:
        ''''''
        print("training:")
        (train_x, train_y,train_len), (test_x, test_y,test_len), (vocab, class_labels), test = generateDatas(MAX_LEN=MAX_LEN,
                                                                                          vocab_set=singlew2v_vocab)
        save(vocab, vocabpath)
        save(class_labels, classlabelspath)
        gpu_options = tf.GPUOptions(per_process_gpu_memory_fraction=0.5)
        sess = tf.Session(config=tf.ConfigProto(gpu_options=gpu_options),graph=tf.Graph())
        with sess:

            char_input,logits,target,length,keepprob,crf_loss,trans,train_op = getBilstmCRF_tf(sess,MAX_LEN, vocab, EMBED_DIM, BiRNN_UNITS, class_labels, weights=singlew2v_matrix)


            sess.run(tf.global_variables_initializer())
            epochs = 300
            saver = tf.train.Saver(max_to_keep=epochs)
            batch_size = 400
            saver.restore(sess,"model/113-0.705722005308-6.94006/model.ckpt")
            print(sess.run(trans))
            # _logits,_trans = sess.run([logits,trans],feed_dict={char_input:test_x,target:test_y,length:test_len,keepprob:1.0})
            # viterbi_sequence = decode(logits=_logits,trans=_trans,sequence_lengths=test_len,tag_num=7)
            # for _seq in viterbi_sequence:
            #     print(_seq)


            # for _i in range(epochs):
            #     size_train_x = np.shape(train_x)[0]
            #     _batch = 0
            #     while(_batch<size_train_x):
            #         _x = train_x[_batch:_batch+batch_size]
            #         _y = train_y[_batch:_batch+batch_size]
            #         _length = np.array(train_len[_batch:_batch+batch_size])
            #         _batch = _batch+batch_size
            #         _loss,_ = sess.run([crf_loss,train_op],feed_dict={char_input:_x,target:_y,length:_length,keepprob:0.85})
            #         # print(_i,_loss)
            #     _logits,_trans = sess.run([logits,trans],feed_dict={char_input:test_x,target:test_y,length:test_len,keepprob:1.0})
            #     print(np.shape(_logits),np.shape(test_y))
            #     acc = getAcc(test_y, _logits, _trans, test_len)
            #     print("---test","epochs:",_i,acc)
            #     print("============","epochs:",str(_i),"loss:",str(_loss)+"done")
            #     saver.save(sess,'model/'+str(_i)+"-"+str(acc)+"-"+str(_loss)+'/model.ckpt')

            model = getBiLSTMCRFModel(MAX_LEN, vocab, EMBED_DIM, BiRNN_UNITS, class_labels, weights=singlew2v_matrix)


            filepath = "log/ep300-acc0.923-loss-0.443-val_loss-0.404-f1_score0.916.h5"
            model.load_weights(filepath)
            print(tf.trainable_variables())
            print(sess.run(sess.graph.get_tensor_by_name("crf_1/chain_kernel:0")))
            for item in np.argmax(model.predict(test_x),-1)[:20]:
                print(item)
            return
            checkpoint = ModelCheckpoint(
                filepath="log/" + "ep{epoch:03d}-acc{acc:.3f}-loss{loss:.3f}-val_loss{val_loss:.3f}-f1_score{val_acc:.3f}.h5",
                monitor="val_loss", verbose=1, save_best_only=False, save_weights_only=True)
            model.fit(train_x, np.expand_dims(train_y, 2), epochs=300, batch_size=400, validation_data=[test_x, np.expand_dims(test_y, 2)],
                      callbacks=[checkpoint])
    else:
        print("predicting")
        singlew2v_vocab = load(vocabpath)
        class_labels = load(classlabelspath)
        singlew2v_matrix = None
        (train_x, train_y), (test_x, test_y), (vocab, class_labels), test = generateDatas(MAX_LEN=MAX_LEN,
                                                                                          vocab_set=singlew2v_vocab)
        model = getBiLSTMCRFModel(MAX_LEN, vocab, EMBED_DIM, BiRNN_UNITS, class_labels, weights=singlew2v_matrix)
        model.load_weights(filepath)
    # # print(train_x[0],train_y[0])
    # predict_y = model.predict(test_x)
    # predict_y1 = np.argmax(predict_y, -1)
    # print(predict_y1[0])
    # with codecs.open("predict_test.txt", "w", encoding="utf8") as f:
    #     for t in range(len(test)):
    #         content = test[t]
    #         if len(content) > MAX_LEN:
    #             range_len = MAX_LEN
    #         else:
    #             range_len = len(content)
    #         for h in range(range_len):
    #             f.write(str(test[t][h][0]) + " " + str(test[t][h][1]) + " " + str(class_labels[predict_y1[t][h]]))
    #             f.write("\n")
    #         f.write("\n")
    #         f.flush()


def fitDataByRule(data):
    '''
    @summary:根据规则补全编号或者名称前后的符号
    '''
    symbol_dict = {"(": ")",
                   "（": "）",
                   "[": "]",
                   "【": "】",
                   ")": "(",
                   "）": "（",
                   "]": "[",
                   "】": "【"}
    leftSymbol_pattern = re.compile("[\(（\[【]")
    rightSymbol_pattern = re.compile("[\)）\]】]")
    leftfinds = re.findall(leftSymbol_pattern, data)
    rightfinds = re.findall(rightSymbol_pattern, data)
    result = data
    if len(leftfinds) + len(rightfinds) == 0:
        return data
    elif len(leftfinds) == len(rightfinds):
        return data
    elif abs(len(leftfinds) - len(rightfinds)) == 1:
        if len(leftfinds) > len(rightfinds):
            if symbol_dict.get(data[0]) is not None:
                result = data[1:]
            else:
                print(symbol_dict.get(leftfinds[0]))
                result = data + symbol_dict.get(leftfinds[0])
        else:
            if symbol_dict.get(data[-1]) is not None:
                result = data[:-1]
            else:
                result = symbol_dict.get(rightfinds[0]) + data
    return result


def predicting(articles, MAX_LEN=None):
    '''
    @summary:预测文章里的编号和名称
    @param:
        articles:文章list
    '''
    print("predicting")

    # ckpt_file = "codename_savedmodel"
    ckpt_file = "codename_savedmodel_bilstmcrf"

    sess = tf.Session(graph=tf.Graph())
    with sess.as_default():
        meta_graph = tf.saved_model.loader.load(sess, tags=["serve"], export_dir=ckpt_file)
        signature_key = tf.saved_model.signature_constants.DEFAULT_SERVING_SIGNATURE_DEF_KEY
        signature_def = meta_graph.signature_def
        inputs = sess.graph.get_tensor_by_name(signature_def[signature_key].inputs["inputs"].name)
        outputs = sess.graph.get_tensor_by_name(signature_def[signature_key].outputs["outputs"].name)

    vocabpath = "models/vocab.pk"
    classlabelspath = "models/classlabels.pk"
    vocab = load(vocabpath)
    class_labels = load(classlabelspath)

    sentences = []
    for article in articles:
        if article[0] != "33ee0f51-7a03-11e8-a4b1-44a84246dbba":
            continue
        for sentence in re.split("[，；。！\n]", article[1]):
            print(sentence)
            sentences.append([sentence, article[0], article[2] if article[2] is not None else "",
                              article[3] if article[3] is not None else ""])
    if MAX_LEN is None:
        sent_len = [len(sentence[0]) for sentence in sentences]
        MAX_LEN = max(sent_len)
        print(MAX_LEN)

    word2index = dict((w, i) for i, w in enumerate(np.array(vocab)))
    index_unk = word2index.get("<unk>")
    index_pad = word2index.get("<pad>")

    x = [[word2index.get(word, index_unk) for word in sentence[0]] for sentence in sentences]
    x = pad_sequences(x, maxlen=MAX_LEN, padding="post", truncating="post")

    MAX_LEN = 300
    train = True
    EMBED_DIM = 60
    BiRNN_UNITS = 128
    model = getBiLSTMCRFModel(MAX_LEN, vocab, EMBED_DIM, BiRNN_UNITS, class_labels, weights=None)

    model.load_weights("log/ep024-acc0.994-loss0.016-val_loss0.022-f1_score0.992.h5")
    # predict_y =  limitRun(sess,[outputs],feed_dict={inputs:x},MAX_BATCH=1)[0]
    predict_y = model.predict(x)
    id_PC_B = class_labels.index("PC_B")
    id_PC_M = class_labels.index("PC_M")
    id_PC_E = class_labels.index("PC_E")
    id_PN_B = class_labels.index("PN_B")
    id_PN_M = class_labels.index("PN_M")
    id_PN_E = class_labels.index("PN_E")
    PC_pattern = re.compile(str(id_PC_B) + str(id_PC_M) + "+" + str(id_PC_E))
    PN_pattern = re.compile(str(id_PN_B) + str(id_PN_M) + "+" + str(id_PN_E))
    result = []
    last_doc_id = ""
    item = []
    for sentence, predict in zip(sentences, np.argmax(predict_y, -1)):
        pad_sentence = sentence[0][:MAX_LEN]
        doc_id = sentence[1]
        join_predict = "".join([str(s) for s in predict])
        if doc_id != last_doc_id:
            if last_doc_id != "":
                result.append(item)
            item = [doc_id, set(), set(), sentence[2], sentence[3]]
        for iter in re.finditer(PC_pattern, join_predict):
            item[1].add(fitDataByRule(pad_sentence[iter.span()[0]:iter.span()[1]]))
        for iter in re.finditer(PN_pattern, join_predict):
            # item[2]=item[2]+";"+pad_sentence[iter.span()[0]:iter.span()[1]]
            item[2].add(fitDataByRule(pad_sentence[iter.span()[0]:iter.span()[1]]))

        last_doc_id = doc_id
    result.append(item)
    print(result[0])
    with codecs.open("predictPCPN.html", "w", encoding="utf8") as f:
        f.write('<html><head>\
        <meta http-equiv="Content-Type"\
        content="text/html; charset=UTF-8">\
        </head>\
        <body bgcolor="#FFFFFF">\
        <table border="1">\
        <tr>\
        <td>doc_id</td>\
        <td>编号</td>\
        <td>名称</td>\
        </tr>')
        for item in result:
            f.write("<tr>" + "<td>" + item[0] + "</td>" + "<td>" + str(item[1]) + "</td>" + "<td>" + str(
                item[2]) + "</td>" + "<td>" + item[3] + "</td>" + "<td>" + item[4] + "</td>" + "</tr>")
        f.write("</table></body>")


def getPredictArticles():
    conn = getConnection()
    cursor = conn.cursor()
    # sql = " select id,content,project_compare.projectcode,project_compare.projectname from articles_processed left join project_compare on id=doc_id where id in(select distinct A.doc_id from entity_mention A,test_predict_role B where A.entity_id=B.entity_id limit 200) order by id"
    sql = " select id,content,code,name from articles_processed A,articles_validation B where A.id=B.doc_id "

    cursor.execute(sql)
    rows = cursor.fetchall()
    return rows


def get_savedmodel():
    MAX_LEN = 300
    EMBED_DIM = 60
    BiRNN_UNITS = 128
    vocabpath = "models/vocab.pk"
    classlabelspath = "models/classlabels.pk"
    vocab = load(vocabpath)
    class_labels = load(classlabelspath)
    with tf.Session(graph=tf.Graph()).as_default() as sess:
        with sess.graph.as_default():
            model = getBiLSTMCRFModel(MAX_LEN, vocab, EMBED_DIM, BiRNN_UNITS, class_labels, weights=None)
            filepath = "log/ep034-acc0.956-loss0.112-val_loss0.112-f1_score0.956.h5"
            model.load_weights(filepath)
            print(tf.trainable_variables())
            print(sess.run(sess.graph.get_tensor_by_name("crf_1/chain_kernel:0"),feed_dict={model.input:np.array([[1,2,3,4,5,6,0,0,0],[2,3,4,5,0,0,0,0,0]])}))
            # tf.saved_model.simple_save(sess,
            #                            "./codename_savedmodel/",
            #                            inputs={"inputs": model.input},
            #                            outputs={"outputs": model.output})
            # tf.summary.FileWriter(logdir="log1",graph=sess.graph)

if __name__ == "__main__":
    training()
    # predicting(getPredictArticles())
    # get_savedmodel()